PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SRS
Protein Properties Length: 474aa    MW: 48130 Da    PI: 7.6636
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105043.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.71.3e-672594203154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass.kaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                     s ta+CqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpaa+rrerq ++ a ++    +s +++ +k++r   +++++++s+t++s++++
  XP_010105043.1 259 SSTATCQDCGNQAKKDCTHRRCRTCCKSRGFECATHVKSTWVPAARRRERQLMNVAGAAvGPGSSGSTSGAKKPRL-FASQTTTTSHTSTSNTTP 352
                     57899*********************************************98776655505555557788888886.588999999********* PP

          DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e 
  XP_010105043.1 353 PRSFDTSSshqdvgykdsLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVEP 420
                     ******999********************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-62261419IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.8E-27263305IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.3E-30371418IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEIYMKIDDE TERSHVTLES PRSSVVATTR RLPSDSGAFA DWVASSSSAA AAAAAAAAAA  60
AGRGASVPDE LSLGFNAGPT GGGGGPASSS SSALWAGSSR PINYGLPPEM GMVGLRDVFV  120
VAPASSFHHP NHHHHHHHHA DPYLIADHHS LNGSNPATAL GVGVGVGVIP LLTATPCLGP  180
VDDDSANALG GSTASRGRSG GGGGSGVAGG VGGGIQLWQN QQNQQHFFKK PGINILDQGI  240
NPNLVQSGGG GGVIGSGSSS TATCQDCGNQ AKKDCTHRRC RTCCKSRGFE CATHVKSTWV  300
PAARRRERQL MNVAGAAVGP GSSGSTSGAK KPRLFASQTT TTSHTSTSNT TPPRSFDTSS  360
SHQDVGYKDS LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKIGGHVFK GFLYDQGVEP  420
KEGFPNISEL HLGGGGGGRN GASSSSPLLD PSDVYAASTG GGLLGGSGYG NQIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105043.10.0hypothetical protein L484_001078
SwissprotQ94CK98e-98LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLW9RQF70.0W9RQF7_9R
STRINGVIT_06s0009g03450.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-72Lateral root primordium (LRP) protein-related